PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27310_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 103aa    MW: 11341.5 Da    PI: 4.763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27310_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58e-125479126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C f++rtG C yG++C+F+H+
  Neem_27310_f_1 54 PGEPDCLFYLRTGLCGYGSNCRFNHP 79
                    5789*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2915381IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-95579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-65880IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-55978IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MNSVPPMPDN RQVKSNAVSN QSADNIEEAI WRLKIHDSQE GGGVAQSSPY PDRPGEPDCL  60
FYLRTGLCGY GSNCRFNHPA YAAQGTQYRE ELPERVGQPD CGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447662.16e-59hypothetical protein CICLE_v10015215mg
RefseqXP_006469597.16e-59PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD99e-33C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A067EWT34e-59A0A067EWT3_CITSI; Uncharacterized protein
TrEMBLA0A067F7T54e-59A0A067F7T5_CITSI; Uncharacterized protein
TrEMBLA0A067F8M67e-59A0A067F8M6_CITSI; Uncharacterized protein
TrEMBLV4U4N87e-59V4U4N8_9R
STRINGPOPTR_0002s21790.17e-53(Populus trichocarpa)
STRINGPOPTR_0014s15770.16e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.25e-34C3H family protein